There are problems with taking high doses of Vitamin D3 that may be an allergic reaction or genetic, and controversy that the amount of non-supplement D3 consumed by people on average may be a lot higher than we think.
Examine.com is a great website. In general, I would consider Vitamin D and Magnesium to be the most beneficial for a layperson without any specific health issues.
It would be so fantastic if we could just have a chip implanted to continuously measure this stuff, then download it and analyze on a daily, weekly, monthly and annual basis. There's so much cool science to be done here, especially if this is done on a global scale.
Yes. There are common panels available at Quest/Labcorp that will measure critical nutrients such as Vitamin D or Vitamin B12. In addition, there is a more comprehensive test called ION available from Metametrix.
http://examine.com/supplements/Vitamin+D/
http://examine.com/supplements/Magnesium/
http://examine.com/supplements/Vitamin+K/